Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs12239648 chr1:152879091 A/T 8.44E-5 501 31.47 33.7 58.43 KM Plot
THCA rs12241046 chr10:131941976 T/C 1.17E-5 502 31.47 32.9 27.18 KM Plot
THCA rs12241091 chr10:104808997 G/A 6.94E-14 503 31.15 35.6 32.1 KM Plot
THCA rs12241656 chr10:104709001 C/T 2.84E-9 502 31.03 34.83 29.58 KM Plot
THCA rs12242000 chr10:104702413 A/C 7.53E-14 502 31.03 36.02 32.1 KM Plot
THCA rs12242635 chr10:29327246 T/C 2.68E-9 501 31.8 30.13 29.28 KM Plot
THCA rs12245251 chr10:131958985 C/T 1.18E-5 502 31.47 32.9 27.18 KM Plot
THCA rs12245343 chr10:104774050 A/G 6.98E-14 503 31.15 36.02 32.1 KM Plot
THCA rs12245779 chr10:104645944 C/A 7.75E-14 501 31.15 36.17 32.1 KM Plot
THCA rs12246689 chr10:104817031 C/T 6.92E-14 503 31.27 35.33 32.1 KM Plot
THCA rs12247627 chr10:131945715 A/G 1.15E-5 503 31.47 32.37 27.18 KM Plot
THCA rs12249425 chr10:131930990 C/T 1.18E-5 502 31.47 33.3 27.18 KM Plot
THCA rs12249610 chr10:29327415 A/G 2.68E-9 501 31.8 30.13 29.28 KM Plot
THCA rs12251035 chr10:104671459 A/C 8.77E-14 501 31.03 35.87 32.1 KM Plot
THCA rs12252500 chr10:104794984 G/C 7.37E-14 501 31.27 35.87 32.1 KM Plot